ENSDARG00000053805


Danio rerio

Features
Gene ID: ENSDARG00000053805
  
Biological name :trub1
  
Synonyms : trub1 / TruB pseudouridine (psi) synthase family member 1
  
Possible biological names infered from orthology : Probable tRNA pseudouridine synthase 1 / Q8C0D0 / Q8WWH5 / TruB pseudouridine synthase family member 1
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 30036425
Gene end: 30043906
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000124035
Ensembl peptide - ENSDARP00000124954
Ensembl peptide - ENSDARP00000070369
Ensembl peptide - ENSDARP00000123987
NCBI entrez gene - 556642     See in Manteia.
swissprot - B3DHG0
swissprot - F8W3T9
swissprot - F8W456
swissprot - F8W5W3
ZFIN ID - ZDB-GENE-080723-73
Ensembl - ENSDARG00000053805
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRUB1ENSGALG00000009091Gallus gallus
 TRUB1ENSG00000165832Homo sapiens
 Trub1ENSMUSG00000025086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trub2 / TruB pseudouridine (psi) synthase family member 2 / O95900* / Q91WG3* / TruB pseudouridine synthase family member 2*ENSDARG0000002837927


Protein motifs (from Interpro)
Interpro ID Name
 IPR002501  Pseudouridine synthase II, N-terminal
 IPR014780  tRNA pseudouridine synthase II, TruB
 IPR020103  Pseudouridine synthase, catalytic domain superfamily
 IPR032819  tRNA pseudouridylate synthase B, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006400 tRNA modification IBA
 biological_processGO:0009451 RNA modification IEA
 biological_processGO:1990481 mRNA pseudouridine synthesis IBA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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