ENSGALG00000009091


Gallus gallus

Features
Gene ID: ENSGALG00000009091
  
Biological name :TRUB1
  
Synonyms : TRUB1 / TruB pseudouridine synthase family member 1
  
Possible biological names infered from orthology : Probable tRNA pseudouridine synthase 1 / Q8C0D0 / Q8WWH5
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 28084024
Gene end: 28110961
  
Corresponding Affymetrix probe sets: Gga.16428.1.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014785
Ensembl peptide - ENSGALP00000061489
Ensembl peptide - ENSGALP00000057155
Ensembl peptide - ENSGALP00000055257
Ensembl peptide - ENSGALP00000049931
NCBI entrez gene - 423914     See in Manteia.
RefSeq - XM_015288931
RefSeq - XM_421776
swissprot - A0A1D5PW26
swissprot - E1BRM1
swissprot - A0A1D5PB12
swissprot - A0A1D5PQU0
swissprot - A0A1L1RRS0
Ensembl - ENSGALG00000009091
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trub1ENSDARG00000053805Danio rerio
 TRUB1ENSG00000165832Homo sapiens
 Trub1ENSMUSG00000025086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRUB2 / TruB pseudouridine synthase family member 2 / O95900* / Q91WG3* / TruB pseudouridine (psi) synthase family member 2*ENSGALG0000000492011


Protein motifs (from Interpro)
Interpro ID Name
 IPR002501  Pseudouridine synthase II, N-terminal
 IPR014780  tRNA pseudouridine synthase II, TruB
 IPR020103  Pseudouridine synthase, catalytic domain superfamily
 IPR032819  tRNA pseudouridylate synthase B, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006400 tRNA modification IBA
 biological_processGO:0009451 RNA modification IEA
 biological_processGO:1990481 mRNA pseudouridine synthesis IBA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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