ENSDARG00000054903


Danio rerio

Features
Gene ID: ENSDARG00000054903
  
Biological name :mta3
  
Synonyms : metastasis associated 1 family, member 3 / mta3
  
Possible biological names infered from orthology : Metastasis-associated protein MTA3 / Q924K8 / Q9BTC8
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 25223799
Gene end: 25284510
  
Corresponding Affymetrix probe sets: Dr.10870.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000109572
Ensembl peptide - ENSDARP00000071648
Ensembl peptide - ENSDARP00000107969
NCBI entrez gene - 100003254     See in Manteia.
RefSeq - NM_199912
RefSeq - XM_021480000
RefSeq Peptide - NP_956206
swissprot - Q6NYU4
swissprot - E7EY65
ZFIN ID - ZDB-GENE-030131-6485
Ensembl - ENSDARG00000054903
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MTA3ENSGALG00000009925Gallus gallus
 MTA3ENSG00000057935Homo sapiens
 Mta3ENSMUSG00000055817Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mta1 / metastasis associated 1 / Q13330* / Q8K4B0* / Mus musculus metastasis associated 1 (Mta1), transcript variant 2, mRNA.*ENSDARG0000000719874
mta2 / metastasis associated 1 family, member 2 / O94776* / Q9R190* / Metastasis-associated protein MTA2 *ENSDARG0000001303168
rerea / arginine-glutamic acid dipeptide (RE) repeats a / RERE* / Q80TZ9* / Q9P2R6* / arginine-glutamic acid dipeptide repeats* / Arginine-glutamic acid dipeptide repeats protein *ENSDARG0000007735324
rereb / arginine-glutamic acid dipeptide (RE) repeats b / RERE* / Q80TZ9* / Q9P2R6* / arginine-glutamic acid dipeptide repeats* / Arginine-glutamic acid dipeptide repeats protein *ENSDARG0000007567018
atn1 / atrophin 1 / P54259* / O35126* / Gm45234* / predicted gene 45234*ENSDARG000000920677


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR001025  Bromo adjacent homology (BAH) domain
 IPR009057  Homeobox-like domain superfamily
 IPR013088  Zinc finger, NHR/GATA-type
 IPR017884  SANT domain
 IPR035170  Metastasis-associated protein MTA1, R1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0060215 primitive hemopoiesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism curved ventral , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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