ENSDARG00000054942


Danio rerio

Features
Gene ID: ENSDARG00000054942
  
Biological name :lgals2a
  
Synonyms : lectin, galactoside-binding, soluble, 2a / lgals2a
  
Possible biological names infered from orthology : galectin 1 / LGALS1 / P09382 / P16045
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 28953274
Gene end: 28961518
  
Corresponding Affymetrix probe sets: Dr.13015.1.S1_at (Zebrafish Array)   NM_212894_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094378
Ensembl peptide - ENSDARP00000121564
NCBI entrez gene - 405830     See in Manteia.
RefSeq - NM_212894
RefSeq Peptide - NP_998059
swissprot - Q6IQI2
ZFIN ID - ZDB-GENE-050318-2
Ensembl - ENSDARG00000054942
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CG-16ENSGALG00000042020Gallus gallus
 LGALS1ENSGALG00000012420Gallus gallus
 LGALS1ENSG00000100097Homo sapiens
 Lgals1ENSMUSG00000068220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lgals1l1 / lectin, galactoside-binding, soluble, 1 (galectin 1)-like 1 / LGALS1* / P16045* / P09382* / galectin 1*ENSDARG0000008871180
lgals2b / lectin, galactoside-binding, soluble, 2b / LGALS1* / P16045* / P09382* / galectin 1*ENSDARG0000003815346


Protein motifs (from Interpro)
Interpro ID Name
 IPR001079  Galectin, carbohydrate recognition domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001944 vasculature development IMP
 biological_processGO:0002040 sprouting angiogenesis IGI
 biological_processGO:0048741 skeletal muscle fiber development IMP
 biological_processGO:0050769 positive regulation of neurogenesis IMP
 biological_processGO:0090303 positive regulation of wound healing IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0016936 galactoside binding IDA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0043236 laminin binding IDA


Pathways (from Reactome)
Pathway description
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Post-translational protein phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
post-vent region bent , abnormal
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 ZFA:0005145 muscle muscle contractile fiber disorganized , abnormal
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 ZFA:0009275 retinal rod cell retinal rod cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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