ENSDARG00000056175


Danio rerio

Features
Gene ID: ENSDARG00000056175
  
Biological name :scrt2
  
Synonyms : scratch family zinc finger 2 / scrt2
  
Possible biological names infered from orthology : Q8BTH6 / Q9NQ03 / scratch family transcriptional repressor 2 / Transcriptional repressor scratch 2
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 28527776
Gene end: 28534245
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000053781
NCBI entrez gene - 325372     See in Manteia.
RefSeq - NM_213637
RefSeq Peptide - NP_998802
swissprot - A4IGB7
ZFIN ID - ZDB-GENE-030131-4097
Ensembl - ENSDARG00000056175
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCRT2ENSGALG00000028912Gallus gallus
 SCRT2ENSG00000215397Homo sapiens
 Scrt2ENSMUSG00000060257Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scrt1b / scratch family zinc finger 1b / SCRT1* / Q9BWW7* / Q99M85* / Transcriptional repressor scratch 1 * / scratch family transcriptional repressor 1*ENSDARG0000004021461
scrt1a / scratch family zinc finger 1a / SCRT1* / Q9BWW7* / scratch family transcriptional repressor 1*ENSDARG0000010082161
snai2 / snail family zinc finger 2 / O43623* / P97469* / snail family transcriptional repressor 2*ENSDARG0000004004632
snai3 / snail family zinc finger 3 / Q9QY31* / Q3KNW1* / Zinc finger protein SNAI3 * / snail family transcriptional repressor 3*ENSDARG0000003124330
snai1b / snail family zinc finger 1b / SNAI1* / O95863* / snail family transcriptional repressor 1*ENSDARG0000004601929
snai1a / snail family zinc finger 1a / SNAI1* / Q02085* / O95863* / snail family zinc finger 1* / snail family transcriptional repressor 1*ENSDARG0000005699526
si:dkey-20i20.3ENSDARG0000009224621
si:dkey-20i20.7ENSDARG0000009356221
si:dkey-20i20.10ENSDARG0000009545520
si:ch73-92e7.6ENSDARG0000009430919
si:dkey-20i20.11ENSDARG0000010188519


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043516 regulation of DNA damage response, signal transduction by p53 class mediator IGI
 biological_processGO:0043523 regulation of neuron apoptotic process IMP
 biological_processGO:2000177 regulation of neural precursor cell proliferation IGI
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000075 spinal cord spinal cord has extra parts of type primary motor neuron , abnormal
spinal cord has extra parts of type neuron , abnormal
spinal cord has extra parts of type primary interneuron , abnormal
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 ZFA:0000098 proliferative region proliferative region mislocalised , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism opaque , abnormal
Show

 ZFA:0009242 primary neuron primary neuron proliferative , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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