ENSMUSG00000060257


Mus musculus

Features
Gene ID: ENSMUSG00000060257
  
Biological name :Scrt2
  
Synonyms : Q8BTH6 / Scrt2 / Transcriptional repressor scratch 2
  
Possible biological names infered from orthology : Q9NQ03 / scratch family transcriptional repressor 2
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: G3
Gene start: 152081529
Gene end: 152095802
  
Corresponding Affymetrix probe sets: 10477058 (MoGene1.0st)   1440930_a_at (Mouse Genome 430 2.0 Array)   1440931_at (Mouse Genome 430 2.0 Array)   1446986_at (Mouse Genome 430 2.0 Array)   1457310_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000066280
NCBI entrez gene - 545474     See in Manteia.
MGI - MGI:2139287
RefSeq - NM_001160410
RefSeq Peptide - NP_001153882
swissprot - Q8BTH6
Ensembl - ENSMUSG00000060257
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scrt2ENSDARG00000056175Danio rerio
 SCRT2ENSGALG00000028912Gallus gallus
 SCRT2ENSG00000215397Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Scrt1 / Q99M85 / Transcriptional repressor scratch 1 / Q9BWW7* / scratch family transcriptional repressor 1*ENSMUSG0000004838561
Snai2 / P97469 / snail family zinc finger 2 / O43623* / snail family transcriptional repressor 2*ENSMUSG0000002267633
Snai3 / Q9QY31 / Zinc finger protein SNAI3 / Q3KNW1* / snail family transcriptional repressor 3*ENSMUSG0000000658730
Snai1 / Q02085 / snail family zinc finger 1 / O95863* / snail family transcriptional repressor 1*ENSMUSG0000004282128


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR029794  Transcriptional repressor SCRATCH 1/2
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:2001222 regulation of neuron migration IMP
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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