ENSDARG00000056386


Danio rerio

Features
Gene ID: ENSDARG00000056386
  
Biological name :tmc1
  
Synonyms : F1QFU0 / tmc1 / transmembrane channel-like 1
  
Possible biological names infered from orthology : Q8R4P5 / Q8TDI8 / Transmembrane channel-like protein 1
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 25652727
Gene end: 25668787
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000089217
Ensembl peptide - ENSDARP00000121310
NCBI entrez gene - 567237     See in Manteia.
RefSeq - NM_001312681
RefSeq - XM_021476287
RefSeq Peptide - NP_001299610
swissprot - F1QFU0
ZFIN ID - ZDB-GENE-060526-261
Ensembl - ENSDARG00000056386
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMC1ENSGALG00000015145Gallus gallus
 TMC1ENSG00000165091Homo sapiens
 Tmc1ENSMUSG00000024749Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmc2b / F1QZE9 / transmembrane channel-like 2b / TMC2* / Q8TDI7* / Q8R4P4* / transmembrane channel like 2* / Transmembrane channel-like protein 2 *ENSDARG0000003031148
tmc2a / E7FFT2 / transmembrane channel-like 2a / TMC2* / Q8TDI7* / Q8R4P4* / transmembrane channel like 2* / Transmembrane channel-like protein 2 *ENSDARG0000003310448
tmc4 / transmembrane channel-like 4ENSDARG0000003175715
tmc6a / transmembrane channel-like 6a / TMC6* / Q7Z403* / transmembrane channel like 6*ENSDARG0000006978715
tmc8 / transmembrane channel-like 8 / Q7TN58* / Q8IU68* / Transmembrane channel-like protein 8 *ENSDARG0000010105015
si:dkey-202l16.5 / TMC5* / Q6UXY8* / Q32NZ6* / transmembrane channel like 5* / Transmembrane channel-like protein 5 *ENSDARG0000001325214
si:dkey-15b23.3 / TMC3* / Q7Z5M5* / transmembrane channel like 3*ENSDARG0000009069610


Protein motifs (from Interpro)
Interpro ID Name
 IPR012496  TMC domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr