ENSDARG00000056483


Danio rerio

Features
Gene ID: ENSDARG00000056483
  
Biological name :ssbp4
  
Synonyms : single stranded DNA binding protein 4 / ssbp4
  
Possible biological names infered from orthology : Q9BWG4
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 20951211
Gene end: 21046843
  
Corresponding Affymetrix probe sets: Dr.10638.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120091
Ensembl peptide - ENSDARP00000064901
NCBI entrez gene - 321750     See in Manteia.
RefSeq - NM_001202512
RefSeq Peptide - NP_001189441
swissprot - F1QSI6
swissprot - F1QDL5
ZFIN ID - ZDB-GENE-030131-469
Ensembl - ENSDARG00000056483
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSBP4ENSG00000130511Homo sapiens
 Ssbp4ENSMUSG00000070003Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:110158 / SSBP4* / Q9BWG4* / single stranded DNA binding protein 4*ENSDARG0000005649098
ssbp3a / single stranded DNA binding protein 3a / SSBP3* / Q9BWW4* / Q9D032* / single stranded DNA binding protein 3*ENSDARG0000005823777
ssbp2 / single-stranded DNA binding protein 2 / P81877* / Q9CYZ8*ENSDARG0000009972774
si:ch211-130m23.3 / SSBP2* / P81877* / Q9CYZ8* / single stranded DNA binding protein 2*ENSDARG0000005739572
ssbp3b / single stranded DNA binding protein 3b / SSBP3* / Q9BWW4* / Q9D032* / single stranded DNA binding protein 3*ENSDARG0000003015568


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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