ENSDARG00000056490


Danio rerio

Features
Gene ID: ENSDARG00000056490
  
Biological name :zgc:110158
  
Synonyms : zgc:110158
  
Possible biological names infered from orthology : Q9BWG4 / single stranded DNA binding protein 4 / SSBP4
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 41577507
Gene end: 41723487
  
Corresponding Affymetrix probe sets: Dr.1760.2.S1_at (Zebrafish Array)   Dr.1760.2.S1_x_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000128426
Ensembl peptide - ENSDARP00000134550
Ensembl peptide - ENSDARP00000018827
Ensembl peptide - ENSDARP00000118681
NCBI entrez gene - 553590     See in Manteia.
swissprot - A0A0R4IGD1
swissprot - F1QK89
swissprot - F1QM58
swissprot - Q503T8
ZFIN ID - ZDB-GENE-050522-195
Ensembl - ENSDARG00000056490
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSBP4ENSG00000130511Homo sapiens
 Ssbp4ENSMUSG00000070003Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ssbp4 / single stranded DNA binding protein 4 / Q9BWG4*ENSDARG0000005648399
ssbp3a / single stranded DNA binding protein 3a / SSBP3* / Q9BWW4* / Q9D032* / single stranded DNA binding protein 3*ENSDARG0000005823777
ssbp2 / single-stranded DNA binding protein 2 / P81877* / Q9CYZ8*ENSDARG0000009972774
si:ch211-130m23.3 / SSBP2* / P81877* / Q9CYZ8* / single stranded DNA binding protein 2*ENSDARG0000005739572
ssbp3b / single stranded DNA binding protein 3b / SSBP3* / Q9BWW4* / Q9D032* / single stranded DNA binding protein 3*ENSDARG0000003015568


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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