ENSDARG00000056678


Danio rerio

Features
Gene ID: ENSDARG00000056678
  
Biological name :trim47
  
Synonyms : trim47 / tripartite motif containing 47
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 26118122
Gene end: 26128179
  
Corresponding Affymetrix probe sets: Dr.2024.1.S1_at (Zebrafish Array)   Dr.2024.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000073663
NCBI entrez gene - 393254     See in Manteia.
swissprot - Q7ZU70
ZFIN ID - ZDB-GENE-040426-1000
Ensembl - ENSDARG00000056678
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-37m8.11 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000004023027
trim69 / tripartite motif containing 69 / Q86WT6*ENSDARG0000006068827
trim62 / tripartite motif containing 62 / Q80V85* / Q9BVG3* / E3 ubiquitin-protein ligase TRIM62 *ENSDARG0000006090127
trim35-20 / tripartite motif containing 35-20 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000007084727
trim35-39 / tripartite motif containing 35-39 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000007124127
trim35-19 / tripartite motif containing 35-19 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000009963927
si:ch211-12p12.2 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010221927
trim35-21 / tripartite motif containing 35-21 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010230327
trim35-33 / tripartite motif containing 35-33 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000006083826
trim35-24 / tripartite motif containing 35-24 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000009968426
trim105 / tripartite motif containing 105ENSDARG0000009988526
si:ch211-175l6.2 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010072126
trim35-25 / tripartite motif containing 35-25 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010105526
trim35-12 / tripartite motif containing 35-12 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010126426
trim35-22 / tripartite motif containing 35-22 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010226426
trim35-23 / tripartite motif containing 35-23 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010236826
trim35-7 / tripartite motif containing 35-7 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010482526
trim35-34 / tripartite motif containing 35-34 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000002227125
trim35-14 / tripartite motif containing 35-14 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000002560125
trim35-10 / tripartite motif containing 35-10 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000003307125


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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