ENSDARG00000057321


Danio rerio

Features
Gene ID: ENSDARG00000057321
  
Biological name :tut1
  
Synonyms : terminal uridylyl transferase 1, U6 snRNA-specific / tut1
  
Possible biological names infered from orthology : AP002990.1 / Q8R3F9 / Q9H6E5
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 10337674
Gene end: 10352001
  
Corresponding Affymetrix probe sets: Dr.13421.2.S1_at (Zebrafish Array)   Dr.16228.1.A1_at (Zebrafish Array)   NM_001030188_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000074395
NCBI entrez gene - 564388     See in Manteia.
RefSeq - NM_001030188
RefSeq Peptide - NP_001025359
swissprot - F1QGS3
ZFIN ID - ZDB-GENE-050706-68
Ensembl - ENSDARG00000057321
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AP002990.1ENSG00000255508Homo sapiens
 TUT1ENSG00000149016Homo sapiens
 Tut1ENSMUSG00000071645Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mtpap / mitochondrial poly(A) polymerase / Q9D0D3* / Q9NVV4* / Poly(A) RNA polymerase, mitochondrial *ENSDARG0000007615519
CABZ01065131.1 / Q5TAX3* / ZCCHC11* / zinc finger CCHC-type containing 11*ENSDARG0000010140413
papd4 / PAP associated domain containing 4 / Q6PIY7* / Q91YI6* / poly(A) RNA polymerase D4, non-canonical*ENSDARG0000009967910
CABZ01032476.1 / Q5VYS8* / ZCCHC6* / zinc finger CCHC-type containing 6* / zinc finger, CCHC domain containing 6*ENSDARG000000746459
zcchc11 / zinc finger, CCHC domain containing 11 / Q5TAX3* / zinc finger CCHC-type containing 11*ENSDARG000000702711


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002058  PAP/25A-associated
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013087  Zinc finger C2H2-type
 IPR034388  Star-PAP, RNA recognition motif
 IPR034389  Speckle targeted PIP5K1A-regulated poly(A) polymerase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0050265 RNA uridylyltransferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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