ENSDARG00000058871


Danio rerio
wdsi:ch73-142c19.1domainrepeatf-boxyvtnrepeat-like-containingsuperfamily-repeat-containingconservedsitebiologicalprocesscellularcomponentmolecularfunctionneddylationantigenprocessingubiquitinationproteasomedegradation

Features
Gene ID: ENSDARG00000058871
  
Biological name :si:ch73-142c19.1
  
Synonyms : si:ch73-142c19.1
  
Possible biological names infered from orthology : F-box and WD-40 domain protein 27 isoform 1 / F-box and WD repeat domain containing 12 / F-box/WD repeat-containing protein 15 / FBXW12 / Fbxw13 / Fbxw14 / Fbxw15 / Fbxw16 / Fbxw17 / Fbxw18 / Fbxw19 / Fbxw20 / Fbxw21 / Fbxw22 / Fbxw24 / Fbxw25 / Fbxw26 / Fbxw27 / Fbxw28 / L7N1X6 / Q6X9E4
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 4392147
Gene end: 4409668
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000076262
Ensembl peptide - ENSDARP00000116184
swissprot - E9QCD7
swissprot - F1QVS9
ZFIN ID - ZDB-GENE-090311-15
Ensembl - ENSDARG00000058871
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FBXW12ENSG00000164049Homo sapiens
 Fbxw13ENSMUSG00000049314Mus musculus
 Fbxw14ENSMUSG00000105589Mus musculus
 Fbxw15ENSMUSG00000074060Mus musculus
 Fbxw16ENSMUSG00000074062Mus musculus
 Fbxw17ENSMUSG00000037816Mus musculus
 Fbxw18ENSMUSG00000074059Mus musculus
 Fbxw19ENSMUSG00000074061Mus musculus
 Fbxw20ENSMUSG00000061701Mus musculus
 Fbxw21ENSMUSG00000047237Mus musculus
 Fbxw22ENSMUSG00000070324Mus musculus
 Fbxw24ENSMUSG00000062275Mus musculus
 Fbxw25ENSMUSG00000094992Mus musculus
 Fbxw26ENSMUSG00000059547Mus musculus
 Fbxw27ENSMUSG00000104614Mus musculus
 Fbxw28ENSMUSG00000054087Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR001810  F-box domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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