ENSDARG00000058962


Danio rerio

Features
Gene ID: ENSDARG00000058962
  
Biological name :txnl4b
  
Synonyms : thioredoxin-like 4B / txnl4b
  
Possible biological names infered from orthology : Q8BUH1 / Q9NX01
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 513986
Gene end: 518076
  
Corresponding Affymetrix probe sets: Dr.14498.1.S1_a_at (Zebrafish Array)   NM_001037123_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000076383
Ensembl peptide - ENSDARP00000100887
NCBI entrez gene - 641329     See in Manteia.
RefSeq - NM_001290146
RefSeq - NM_001037123
RefSeq Peptide - NP_001032200
RefSeq Peptide - NP_001277075
swissprot - Q3B728
ZFIN ID - ZDB-GENE-051030-63
Ensembl - ENSDARG00000058962
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TXNL4BENSGALG00000015327Gallus gallus
 Q9NX01ENSG00000140830Homo sapiens
 Q8BUH1ENSMUSG00000031723Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
txnl4a / thioredoxin-like 4AENSDARG0000003619032


Protein motifs (from Interpro)
Interpro ID Name
 IPR004123  Dim1 family
 IPR012336  Thioredoxin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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