ENSDARG00000060687


Danio rerio

Features
Gene ID: ENSDARG00000060687
  
Biological name :chd2
  
Synonyms : chd2 / chromodomain helicase DNA binding protein 2
  
Possible biological names infered from orthology : AC013394.1 / E9PZM4 / O14647
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 24933473
Gene end: 24989580
  
Corresponding Affymetrix probe sets: Dr.14689.1.A1_at (Zebrafish Array)   Dr.15242.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000080170
Ensembl peptide - ENSDARP00000117007
Ensembl peptide - ENSDARP00000138660
NCBI entrez gene - 569795     See in Manteia.
RefSeq - NM_001281462
RefSeq Peptide - NP_001268391
swissprot - F1QRB9
swissprot - A0A0R4IR86
swissprot - Q1LVN0
ZFIN ID - ZDB-GENE-050419-256
Ensembl - ENSDARG00000060687
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHD2ENSGALG00000006949Gallus gallus
 AC013394.1ENSG00000279765Homo sapiens
 CHD2ENSG00000173575Homo sapiens
 Chd2ENSMUSG00000078671Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chd1 / chromodomain helicase DNA binding protein 1 / O14646* / P40201* / Q9CQS5*ENSDARG0000010378755
chd4a / chromodomain helicase DNA binding protein 4a / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C...ENSDARG0000006353527
chd5 / chromodomain helicase DNA binding protein 5 / A2A8L1* / Q8TDI0*ENSDARG0000010508327
chd4b / chromodomain helicase DNA binding protein 4b / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C...ENSDARG0000002578926
chd3 / chromodomain helicase DNA binding protein 3 / Q12873*ENSDARG0000002140525
chd7 / chromodomain helicase DNA binding protein 7 / A2AJK6* / Q9P2D1*ENSDARG0000007521124
chd8 / chromodomain helicase DNA binding protein 8 / Q09XV5* / Q9HCK8*ENSDARG0000007554324
chd6 / chromodomain helicase DNA binding protein 6 / Q8TD26*ENSDARG0000001724423
chd9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8*ENSDARG0000007449823


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR025260  Domain of unknown function DUF4208
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0040011 locomotion IMP
 biological_processGO:0043009 chordate embryonic development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000076 swim bladder swim bladder absent , abnormal
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 ZFA:0000445 optic tectum optic tectum transmission of nerve impulse process quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk increased curvature , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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