ENSDARG00000060954


Danio rerio

Features
Gene ID: ENSDARG00000060954
  
Biological name :tmcc1b
  
Synonyms : tmcc1b / transmembrane and coiled-coil domain family 1b
  
Possible biological names infered from orthology : O94876 / Q69ZZ6 / TMCC1 / transmembrane and coiled-coil domain family 1 / transmembrane and coiled coil domains 1
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 18205766
Gene end: 18244561
  
Corresponding Affymetrix probe sets: Dr.5827.1.A1_at (Zebrafish Array)   NM_001080008_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000080872
Ensembl peptide - ENSDARP00000144551
NCBI entrez gene - 563581     See in Manteia.
RefSeq - XM_005172860
RefSeq - NM_001080008
RefSeq Peptide - NP_001073477
swissprot - Q08BC7
ZFIN ID - ZDB-GENE-061013-154
Ensembl - ENSDARG00000060954
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMCC1ENSGALG00000008487Gallus gallus
 TMCC1ENSG00000172765Homo sapiens
 Tmcc1ENSMUSG00000030126Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TMCC1 (1 of many) / transmembrane and coiled-coil domain family 1 / TMCC1* / Q69ZZ6* / O94876* / transmembrane and coiled coil domains 1*ENSDARG0000007674744
tmcc2 / transmembrane and coiled-coil domain family 2 / O75069* / Q80W04* / transmembrane and coiled-coil domains 2*ENSDARG0000004600741
tmcc3 / transmembrane and coiled-coil domain family 3 / Q8R310* / Q9ULS5* / Transmembrane and coiled-coil domain protein 3 *ENSDARG0000004552534


Protein motifs (from Interpro)
Interpro ID Name
 IPR019394  Testis-specific protein TEX28/transmembrane and coiled-coil domains protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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