ENSDARG00000062338


Danio rerio

Features
Gene ID: ENSDARG00000062338
  
Biological name :zeb2a
  
Synonyms : zeb2a / zinc finger E-box binding homeobox 2a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 25568839
Gene end: 25837749
  
Corresponding Affymetrix probe sets: Dr.8822.1.A1_at (Zebrafish Array)   DrAffx.2.73.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000119978
Ensembl peptide - ENSDARP00000156250
Ensembl peptide - ENSDARP00000152334
Ensembl peptide - ENSDARP00000143681
Ensembl peptide - ENSDARP00000104669
Ensembl peptide - ENSDARP00000105699
Ensembl peptide - ENSDARP00000119247
NCBI entrez gene - 100003889     See in Manteia.
RefSeq - NM_001135104
RefSeq - XM_005167525
RefSeq Peptide - NP_001128576
swissprot - F1QY45
swissprot - F1R157
swissprot - E9QFM2
swissprot - E9QCY3
swissprot - A0A286Y942
ZFIN ID - ZDB-GENE-070912-553
Ensembl - ENSDARG00000062338
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zeb2b / zinc finger E-box binding homeobox 2b / ZEB2* / O60315* / zinc finger E-box binding homeobox 2*ENSDARG0000007841661
zeb1b / zinc finger E-box binding homeobox 1b / ZEB1* / Q64318* / P37275* / zinc finger E-box binding homeobox 1*ENSDARG0000001320732
zeb1a / zinc finger E-box binding homeobox 1a / ZEB1* / Q64318* / P37275* / zinc finger E-box binding homeobox 1*ENSDARG0000001678828
BX005085.1 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000000899477
CR388132.2 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001040417
BX470259.3 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001115067
znf1124 / zinc finger protein 1124 / O75467* / Q6AW86* / ZNF324* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000000697966
zgc:173575 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001154566
zgc:173575 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001168155


Protein motifs (from Interpro)
Interpro ID Name
 IPR008598  Drought induced 19 protein type, zinc-binding domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0014029 neural crest formation IMP
 biological_processGO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway IMP
 biological_processGO:0060028 convergent extension involved in axis elongation IGI
 biological_processGO:0060030 dorsal convergence IMP
 biological_processGO:0090243 fibroblast growth factor receptor signaling pathway involved in somitogenesis IMP
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000077 tail bud tail bud increased width , abnormal
tail bud morphology , abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
Show

 ZFA:0000155 somite somite shape , abnormal
somite increased size , abnormal
somite increased width , abnormal
somite anterior-posterior polarity , abnormal
somite anterior-posterior axis condensed , abnormal
somite medial-lateral axis increased width , abnormal
somite morphology , abnormal
Show

 ZFA:0000279 segmental plate segmental plate increased width , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism medial-lateral axis increased width , abnormal
whole organism anterior-posterior axis curved ventral , abnormal
Show

 ZFA:0001115 trunk trunk has fewer parts of type somite , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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