ENSDARG00000016788


Danio rerio

Features
Gene ID: ENSDARG00000016788
  
Biological name :zeb1a
  
Synonyms : zeb1a / zinc finger E-box binding homeobox 1a
  
Possible biological names infered from orthology : P37275 / Q64318 / ZEB1 / zinc finger E-box binding homeobox 1
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 43807230
Gene end: 43852207
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000157629
Ensembl peptide - ENSDARP00000024857
Ensembl peptide - ENSDARP00000114082
Ensembl peptide - ENSDARP00000120561
NCBI entrez gene - 100004929     See in Manteia.
swissprot - F1QBD3
swissprot - F1QL88
swissprot - F1QMZ5
ZFIN ID - ZDB-GENE-070912-124
Ensembl - ENSDARG00000016788
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZEB1ENSGALG00000007260Gallus gallus
 ZEB1ENSG00000148516Homo sapiens
 Zeb1ENSMUSG00000024238Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zeb1b / zinc finger E-box binding homeobox 1b / ZEB1* / Q64318* / P37275* / zinc finger E-box binding homeobox 1*ENSDARG0000001320739
zeb2b / zinc finger E-box binding homeobox 2b / ZEB2* / O60315* / zinc finger E-box binding homeobox 2*ENSDARG0000007841631
zeb2a / zinc finger E-box binding homeobox 2aENSDARG0000006233829
CR388132.2 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001040417
BX470259.3 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001115067
znf1124 / zinc finger protein 1124 / O75467* / Q6AW86* / ZNF324* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000000697966
BX005085.1 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000000899476
zgc:173575 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001154566
zgc:173575 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001168155


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR008598  Drought induced 19 protein type, zinc-binding domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010470 regulation of gastrulation IGI
 biological_processGO:0048745 smooth muscle tissue development IMP
 biological_processGO:0070587 regulation of cell-cell adhesion involved in gastrulation IGI
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000041 mesoderm mesoderm decreased amount , abnormal
Show

 ZFA:0000086 EVL EVL anatomical surface rough , abnormal
EVL cell detached from EVL , abnormal
EVL cell decreased adhesivity , abnormal
Show

 ZFA:0000112 gut gut peristalsis decreased occurrence , abnormal
gut anatomical region spatial pattern , abnormal
Show

 ZFA:0000121 lateral plate mesoderm lateral plate mesoderm tissue migration decreased occurrence , abnormal
lateral plate mesoderm tissue migration decreased process quality , abnormal
Show

 ZFA:0001338 intestine intestine smooth muscle decreased amount , abnormal
intestine smooth muscle cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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