ENSDARG00000062621


Danio rerio

Features
Gene ID: ENSDARG00000062621
  
Biological name :satb1b
  
Synonyms : satb1b / SATB homeobox 1b
  
Possible biological names infered from orthology : Mus musculus special AT-rich sequence binding protein 1 (Satb1), transcript variant 5, mRNA. / Q01826 / Q60611 / SATB1 / SATB homeobox 1
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 49393200
Gene end: 49505275
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136225
swissprot - A0A0G2KUW7
ZFIN ID - ZDB-GENE-030131-7105
Ensembl - ENSDARG00000062621
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SATB1ENSGALG00000011254Gallus gallus
 SATB1ENSG00000182568Homo sapiens
 Satb1ENSMUSG00000023927Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
satb2 / SATB homeobox 2 / Q8VI24* / Q9UPW6* / special AT-rich sequence binding protein 2*ENSDARG0000006188547
satb1a / SATB homeobox 1aENSDARG0000005764939


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR032355  SATB, CUT1-like DNA-binding domain
 IPR032392  SATB, ubiquitin-like oligomerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030099 myeloid cell differentiation IMP
 biological_processGO:0030223 neutrophil differentiation IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Apoptotic cleavage of cellular proteins
SUMOylation of chromatin organization proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000094 blood island blood island has fewer parts of type neutrophil , abnormal
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 ZFA:0009323 thrombocyte thrombocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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