ENSDARG00000061885


Danio rerio

Features
Gene ID: ENSDARG00000061885
  
Biological name :satb2
  
Synonyms : satb2 / SATB homeobox 2
  
Possible biological names infered from orthology : Q8VI24 / Q9UPW6 / special AT-rich sequence binding protein 2
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 32560399
Gene end: 32604414
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000083309
Ensembl peptide - ENSDARP00000141418
NCBI entrez gene - 563435     See in Manteia.
RefSeq - NM_001128532
RefSeq Peptide - NP_001122004
swissprot - E1ANH4
swissprot - A8WIP9
swissprot - A0A0R4IX56
ZFIN ID - ZDB-GENE-070912-212
Ensembl - ENSDARG00000061885
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SATB2ENSGALG00000008135Gallus gallus
 SATB2ENSG00000119042Homo sapiens
 Satb2ENSMUSG00000038331Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
satb1b / SATB homeobox 1b / SATB1* / Q60611* / Q01826* / SATB homeobox 1* / Mus musculus special AT-rich sequence binding protein 1 (Satb1), transcript variant 5, mRNA.*ENSDARG0000006262146
satb1a / SATB homeobox 1aENSDARG0000005764937


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR032355  SATB, CUT1-like DNA-binding domain
 IPR032392  SATB, ubiquitin-like oligomerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
SUMOylation of chromatin organization proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000309 E-YSL E-YSL immature , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism actin filament disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000007438 ube2ib / Q9W6H5 / ubiquitin-conjugating enzyme E2Ib / UBE2I* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000028119 Q6NV25 / sumo3a / small ubiquitin-like modifier 3a / SUMO3* / Q9Z172* / P55854* / small ubiquitin-like modifier 3*  / reaction
 ENSDARG00000035993 sumo3b / small ubiquitin-like modifier 3b / SUMO3* / P55854* / small ubiquitin-like modifier 3*  / reaction
 ENSDARG00000052649 Q9DDJ0 / ube2ia / ubiquitin-conjugating enzyme E2Ia / UBE2I* / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction






 

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