ENSDARG00000070435


Danio rerio

Features
Gene ID: ENSDARG00000070435
  
Biological name :vapb
  
Synonyms : VAMP (vesicle-associated membrane protein)-associated protein B and C / vapb
  
Possible biological names infered from orthology : O95292 / VAMP associated protein B and C / vesicle-associated membrane protein, associated protein B and C
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 49583153
Gene end: 49636529
  
Corresponding Affymetrix probe sets: Dr.935.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000094134
NCBI entrez gene - 323628     See in Manteia.
swissprot - Q6P2B0
ZFIN ID - ZDB-GENE-030131-2348
Ensembl - ENSDARG00000070435
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VAPBENSGALG00000007549Gallus gallus
 VAPBENSG00000124164Homo sapiens
 VapbENSMUSG00000054455Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vapal / VAMP (vesicle-associated membrane protein)-associated protein A, like / VAPA* / Q9P0L0* / VAMP associated protein A*ENSDARG0000011586253
top1mt / DNA topoisomerase I mitochondrial / VAPA* / Q9P0L0* / VAMP associated protein A*ENSDARG0000002782434


Protein motifs (from Interpro)
Interpro ID Name
 IPR000535  Major sperm protein (MSP) domain
 IPR008962  PapD-like superfamily
 IPR013783  Immunoglobulin-like fold
 IPR016763  Vesicle-associated membrane-protein-associated protein
 IPR030226  Vesicle-associated membrane protein-associated protein B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0036269 swimming behavior IMP
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009052 motor neuron motor neuron axon morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000063218 ppm1la / protein phosphatase, Mg2+/Mn2+ dependent, 1La / PPM1L* / Q8BHN0* / Q5SGD2* / Protein phosphatase 1L * / protein phosphatase, Mg2+/Mn2+ dependent 1L*  / complex
 ENSDARG00000024325 col4a3bpa / collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a / Q9EQG9* / Q9Y5P4* / COL4A3BP* / collagen type IV alpha 3 binding protein*  / complex / reaction
 ENSDARG00000089641 ppm1lb / protein phosphatase, Mg2+/Mn2+ dependent, 1Lb / PPM1L* / Q8BHN0* / Q5SGD2* / Protein phosphatase 1L * / protein phosphatase, Mg2+/Mn2+ dependent 1L*  / complex






 

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