ENSDARG00000073814


Danio rerio

Features
Gene ID: ENSDARG00000073814
  
Biological name :pax1b
  
Synonyms : paired box 1b / pax1b
  
Possible biological names infered from orthology : P09084 / P15863 / paired box 1 / Paired box protein Pax-1 / PAX1
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 48694056
Gene end: 48701593
  
Corresponding Affymetrix probe sets: Dr.26407.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000146188
Ensembl peptide - ENSDARP00000121471
Ensembl peptide - ENSDARP00000146219
NCBI entrez gene - 572108     See in Manteia.
RefSeq - XM_695785
swissprot - B0S7C8
ZFIN ID - ZDB-GENE-060503-372
Ensembl - ENSDARG00000073814
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAX1ENSGALG00000039040Gallus gallus
 PAX1ENSG00000125813Homo sapiens
 Pax1ENSMUSG00000037034Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pax1a / paired box 1a / PAX1* / P15863* / paired box 1*ENSDARG0000000820373
pax9 / paired box 9 / P47242* / P55771* / Paired box protein Pax-9 *ENSDARG0000005382954
pax2b / paired box 2b / PAX2* / Q02962* / paired box 2*ENSDARG0000003257837
pax2a / Q90268 / paired box 2a / PAX2* / Q02962* / paired box 2*ENSDARG0000002814836
pax3a / paired box 3a / PAX3* / P23760* / P24610* / paired box 3*ENSDARG0000001019235
pax8 / paired box 8 / Q06710*ENSDARG0000001587935
pax7b / paired box 7b / PAX7* / P47239* / P23759* / paired box 7* / Paired box protein Pax-7 *ENSDARG0000007081835
pax7a / paired box 7a / PAX7* / P23759* / paired box 7*ENSDARG0000010039835
pax5 / paired box 5 / Q02548* / Q02650* / Paired box protein Pax-5 *ENSDARG0000003738334
pax6b / paired box 6bENSDARG0000004593632
pax6a / P26630 / paired box 6aENSDARG0000010337932
pax3b / paired box 3b / PAX3* / P23760* / paired box 3*ENSDARG0000002834831
pax4 / paired box 4 / O43316* / P32115*ENSDARG0000002133624


Protein motifs (from Interpro)
Interpro ID Name
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR033206  Paired box protein PAX1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0033339 pectoral fin development IMP
 biological_processGO:0048706 embryonic skeletal system development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000141 pectoral fin bud pectoral fin bud decreased size , abnormal
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 ZFA:0001094 whole organism whole organism lacks parts or has fewer parts of type pectoral fin bud , abnormal
whole organism lacks parts or has fewer parts of type pectoral fin , abnormal
whole organism anterior-posterior axis increased curvature , abnormal
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 ZFA:0001117 post-vent region post-vent region malformed , abnormal
post-vent region decreased length , abnormal
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 ZFA:0001216 splanchnocranium splanchnocranium hypoplastic , abnormal
Show

 ZFA:0001383 fin bud fin bud hypoplastic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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