ENSDARG00000100398


Danio rerio

Features
Gene ID: ENSDARG00000100398
  
Biological name :pax7a
  
Synonyms : paired box 7a / pax7a
  
Possible biological names infered from orthology : P23759 / P47239 / paired box 7 / Paired box protein Pax-7 / PAX7
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 41242644
Gene end: 41372948
  
Corresponding Affymetrix probe sets: Dr.1470.1.S1_at (Zebrafish Array)   Dr.23455.1.S1_at (Zebrafish Array)   Dr.23456.1.S1_at (Zebrafish Array)   Dr.8033.1.S1_at (Zebrafish Array)   NM_131332_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000137008
Ensembl peptide - ENSDARP00000149764
Ensembl peptide - ENSDARP00000139375
Ensembl peptide - ENSDARP00000138120
Ensembl peptide - ENSDARP00000130600
NCBI entrez gene - 30587     See in Manteia.
RefSeq - NM_131332
RefSeq Peptide - NP_571407
swissprot - A0A0R4IM38
swissprot - O57417
swissprot - O57418
swissprot - B3DJR7
swissprot - B3DJI1
ZFIN ID - ZDB-GENE-990415-201
Ensembl - ENSDARG00000100398
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAX7ENSGALG00000043204Gallus gallus
 PAX7ENSG00000009709Homo sapiens
 Pax7ENSMUSG00000028736Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pax7b / paired box 7b / PAX7* / P47239* / P23759* / paired box 7* / Paired box protein Pax-7 *ENSDARG0000007081893
pax3a / paired box 3a / PAX3* / P23760* / P24610* / paired box 3*ENSDARG0000001019269
pax3b / paired box 3b / PAX3* / P23760* / paired box 3*ENSDARG0000002834860
pax6a / P26630 / paired box 6aENSDARG0000010337933
pax6b / paired box 6bENSDARG0000004593632
pax8 / paired box 8 / Q06710*ENSDARG0000001587929
pax2a / Q90268 / paired box 2a / PAX2* / Q02962* / paired box 2*ENSDARG0000002814829
pax2b / paired box 2b / PAX2* / Q02962* / paired box 2*ENSDARG0000003257829
pax5 / paired box 5 / Q02548* / Q02650* / Paired box protein Pax-5 *ENSDARG0000003738327
pax9 / paired box 9 / P47242* / P55771* / Paired box protein Pax-9 *ENSDARG0000005382925
pax1b / paired box 1b / PAX1* / P15863* / P09084* / paired box 1* / Paired box protein Pax-1 *ENSDARG0000007381425
pax1a / paired box 1a / PAX1* / P15863* / paired box 1*ENSDARG0000000820324
pax4 / paired box 4 / O43316* / P32115*ENSDARG0000002133621


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001523  Paired domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017970  Homeobox, conserved site
 IPR022106  Paired box protein 7, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0042060 wound healing IGI
 biological_processGO:0048066 developmental pigmentation IMP
 biological_processGO:0050938 regulation of xanthophore differentiation IGI
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism has fewer parts of type xanthoblast , abnormal
whole organism lacks all parts of type xanthophore , abnormal
Show

 ZFA:0001114 head head xanthophore colored , abnormal
head has extra parts of type melanoblast , abnormal
head larval melanophore stripe has extra parts of type melanocyte , abnormal
Show

 ZFA:0001115 trunk trunk xanthophore colored , abnormal
trunk absent , abnormal
trunk has fewer parts of type melanocyte , abnormal
trunk melanocyte disorganized , abnormal
Show

 ZFA:0005221 dorsal larval melanophore stripe dorsal larval melanophore stripe has extra parts of type melanocyte , abnormal
Show

 ZFA:0005277 skeletal muscle skeletal muscle decreased amount , abnormal
skeletal muscle wound healing increased occurrence , abnormal
Show

 ZFA:0009198 xanthophore xanthophore pterinosome morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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