ENSDARG00000073883


Danio rerio

Features
Gene ID: ENSDARG00000073883
  
Biological name :clstn3
  
Synonyms : calsyntenin 3 / clstn3
  
Possible biological names infered from orthology : Mus musculus calsyntenin 3 (Clstn3), transcript variant 2, mRNA. / Q99JH7 / Q9BQT9
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 12102336
Gene end: 12173647
  
Corresponding Affymetrix probe sets: Dr.14069.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120261
Ensembl peptide - ENSDARP00000128441
Ensembl peptide - ENSDARP00000104134
NCBI entrez gene - 555627     See in Manteia.
swissprot - E9QCL6
swissprot - F1QD83
swissprot - X1WDZ1
ZFIN ID - ZDB-GENE-100921-73
Ensembl - ENSDARG00000073883
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLSTN3ENSGALG00000014674Gallus gallus
 CLSTN3ENSG00000139182Homo sapiens
 Clstn3ENSMUSG00000008153Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clstn1 / calsyntenin 1 / O94985* / Q9EPL2* / Calsyntenin-1 Soluble Alc-alpha CTF1-alpha*ENSDARG0000003172049
clstn2 / calsyntenin 2 / Q9ER65* / Q9H4D0*ENSDARG0000006063744
si:ch211-276c2.2 / CLSTN2* / Q9ER65* / Q9H4D0* / calsyntenin 2*ENSDARG0000006063839


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR015919  Cadherin-like
 IPR026914  Calsyntenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr