ENSDARG00000031720


Danio rerio

Features
Gene ID: ENSDARG00000031720
  
Biological name :clstn1
  
Synonyms : calsyntenin 1 / clstn1
  
Possible biological names infered from orthology : Calsyntenin-1 Soluble Alc-alpha CTF1-alpha / O94985 / Q9EPL2
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 29580584
Gene end: 29668286
  
Corresponding Affymetrix probe sets: Dr.12835.1.A1_at (Zebrafish Array)   Dr.25212.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000059338
Ensembl peptide - ENSDARP00000139138
Ensembl peptide - ENSDARP00000119688
Ensembl peptide - ENSDARP00000109493
NCBI entrez gene - 777737     See in Manteia.
RefSeq - XM_009296878
swissprot - E9QIY1
swissprot - E7EYL3
swissprot - A0A0R4IX72
swissprot - F1R520
ZFIN ID - ZDB-GENE-040426-1064
Ensembl - ENSDARG00000031720
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLSTN1ENSGALG00000002606Gallus gallus
 CLSTN1ENSG00000171603Homo sapiens
 Clstn1ENSMUSG00000039953Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clstn2 / calsyntenin 2 / Q9ER65* / Q9H4D0*ENSDARG0000006063753
clstn3 / calsyntenin 3 / Q99JH7* / Q9BQT9* / Mus musculus calsyntenin 3 (Clstn3), transcript variant 2, mRNA.*ENSDARG0000007388350
si:ch211-276c2.2 / CLSTN2* / Q9ER65* / Q9H4D0* / calsyntenin 2*ENSDARG0000006063846


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR015919  Cadherin-like
 IPR026914  Calsyntenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IDA
 biological_processGO:0048670 regulation of collateral sprouting IMP
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000295 trigeminal ganglion trigeminal ganglion axon decreased branchiness , abnormal
trigeminal ganglion collateral sprouting decreased occurrence , abnormal
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 ZFA:0009150 Rohon-Beard neuron Rohon-Beard neuron axon decreased branchiness , abnormal
Rohon-Beard neuron collateral sprouting decreased occurrence , abnormal
Rohon-Beard neuron anterograde axonal transport decreased occurrence , abnormal
Rohon-Beard neuron growth cone decreased volume , abnormal
Rohon-Beard neuron growth cone decreased branchiness , abnormal
Rohon-Beard neuron axon extension increased rate , abnormal
Rohon-Beard neuron retrograde transport, endosome to plasma membrane decreased occurrence , abnormal
Rohon-Beard neuron early endosome mislocalised , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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