ENSGALG00000002606


Gallus gallus

Features
Gene ID: ENSGALG00000002606
  
Biological name :CLSTN1
  
Synonyms : calsyntenin 1 / CLSTN1
  
Possible biological names infered from orthology : Calsyntenin-1 Soluble Alc-alpha CTF1-alpha / O94985 / Q9EPL2
  
Species: Gallus gallus
  
Chr. number: 21
Strand: -1
Band:
Gene start: 3489330
Gene end: 3523996
  
Corresponding Affymetrix probe sets: Gga.4010.1.S1_s_at (Chicken Array)   Gga.4010.2.S1_at (Chicken Array)   Gga.5887.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000034416
Ensembl peptide - ENSGALP00000043865
Ensembl peptide - ENSGALP00000004095
NCBI entrez gene - 395372     See in Manteia.
RefSeq - XM_015296823
RefSeq - NM_001197050
RefSeq - XM_015296821
RefSeq - XM_015296822
RefSeq Peptide - NP_001183979
swissprot - E1BYQ5
swissprot - F6T168
swissprot - A0A1D5NU56
Ensembl - ENSGALG00000002606
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clstn1ENSDARG00000031720Danio rerio
 CLSTN1ENSG00000171603Homo sapiens
 Clstn1ENSMUSG00000039953Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CLSTN2 / calsyntenin 2 / Q9ER65* / Q9H4D0*ENSGALG0000003738752
CLSTN3 / calsyntenin 3 / Q99JH7* / Q9BQT9* / Mus musculus calsyntenin 3 (Clstn3), transcript variant 2, mRNA.*ENSGALG0000001467451


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR015919  Cadherin-like
 IPR026914  Calsyntenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001558 regulation of cell growth IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0050806 positive regulation of synaptic transmission IEA
 biological_processGO:0051965 positive regulation of synapse assembly IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 molecular_functionGO:0001540 amyloid-beta binding IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0019894 kinesin binding IEA
 molecular_functionGO:0042988 X11-like protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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