ENSDARG00000074415


Danio rerio

Features
Gene ID: ENSDARG00000074415
  
Biological name :zgc:171482
  
Synonyms : zgc:171482
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 39656610
Gene end: 39830999
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000116257
Ensembl peptide - ENSDARP00000117708
Ensembl peptide - ENSDARP00000098098
NCBI entrez gene - 796610     See in Manteia.
swissprot - A9JST7
swissprot - F1QFB4
swissprot - F1R3A5
ZFIN ID - ZDB-GENE-080204-84
Ensembl - ENSDARG00000074415
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zmat4b / zinc finger, matrin-type 4b / ZMAT4* / Q8BZ94* / Q9H898* / zinc finger matrin-type 4*ENSDARG0000006141959
zmat4a / zinc finger, matrin-type 4a / ZMAT4* / Q8BZ94* / Q9H898* / zinc finger matrin-type 4*ENSDARG0000009298758
znf346 / zinc finger protein 346 / Q9UL40*ENSDARG0000006069540
zgc:114104 / ZMAT1* / KRCC1* / Q5H9K5* / Q99JT5* / Q9NPI7* / zinc finger matrin-type 1* / lysine rich coiled-coil 1* / Lysine-rich coiled-coil protein 1 *ENSDARG0000005867931


Protein motifs (from Interpro)
Interpro ID Name
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013087  Zinc finger C2H2-type
 IPR022755  Zinc finger, double-stranded RNA binding


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator IBA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0002039 p53 binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr