ENSDARG00000058679


Danio rerio

Features
Gene ID: ENSDARG00000058679
  
Biological name :zgc:114104
  
Synonyms : zgc:114104
  
Possible biological names infered from orthology : KRCC1 / lysine rich coiled-coil 1 / Lysine-rich coiled-coil protein 1 / Q5H9K5 / Q99JT5 / Q9NPI7 / zinc finger matrin-type 1 / ZMAT1
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 11521163
Gene end: 11529370
  
Corresponding Affymetrix probe sets: Dr.6510.1.A1_at (Zebrafish Array)   NM_001030231_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118594
NCBI entrez gene - 569093     See in Manteia.
RefSeq - NM_001030231
RefSeq - XM_021468891
RefSeq Peptide - NP_001025402
swissprot - F1QKW1
ZFIN ID - ZDB-GENE-050913-63
Ensembl - ENSDARG00000058679
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000046009Gallus gallus
 KRCC1ENSG00000172086Homo sapiens
 ZMAT1ENSG00000166432Homo sapiens
 Krcc1ENSMUSG00000053012Mus musculus
 Zmat1ENSMUSG00000052676Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
znf346 / zinc finger protein 346 / Q9UL40*ENSDARG0000006069516
zmat4a / zinc finger, matrin-type 4a / ZMAT4* / Q8BZ94* / Q9H898* / zinc finger matrin-type 4*ENSDARG0000009298715
zmat4b / zinc finger, matrin-type 4b / ZMAT4* / Q8BZ94* / Q9H898* / zinc finger matrin-type 4*ENSDARG0000006141914
zgc:171482ENSDARG000000744157


Protein motifs (from Interpro)
Interpro ID Name
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator IBA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0002039 p53 binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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