ENSDARG00000075713


Danio rerio

Features
Gene ID: ENSDARG00000075713
  
Biological name :shox2
  
Synonyms : short stature homeobox 2 / shox2
  
Possible biological names infered from orthology : O60902 / P70390
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 2182103
Gene end: 2188422
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000018280
Ensembl peptide - ENSDARP00000121424
Ensembl peptide - ENSDARP00000119167
NCBI entrez gene - 394171     See in Manteia.
RefSeq - NM_201196
RefSeq Peptide - NP_957490
swissprot - E9QBI3
swissprot - E9QBA7
swissprot - Q7SZN8
ZFIN ID - ZDB-GENE-040426-1457
Ensembl - ENSDARG00000075713
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SHOX2ENSG00000168779Homo sapiens
 Shox2ENSMUSG00000027833Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
shox / short stature homeobox / O15266*ENSDARG0000002589161
otpa / orthopedia homeobox a / OTP* / Q5XKR4* / orthopedia homeobox*ENSDARG0000001420123
otpb / Q6DGH9 / orthopedia homeobox b / OTP* / O09113* / Q5XKR4* / orthopedia homeobox* / Homeobox protein orthopedia *ENSDARG0000005837923


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0008016 regulation of heart contraction IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood accumulation pericardium , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000114 heart heart decreased functionality , abnormal
Show

 ZFA:0000154 sinus venosus sinus venosus hypoplastic , abnormal
sinus venosus myocardium poorly differentiated , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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