ENSDARG00000075905


Danio rerio

Features
Gene ID: ENSDARG00000075905
  
Biological name :si:ch211-266g18.9
  
Synonyms : si:ch211-266g18.9
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 15580665
Gene end: 15600552
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000098645
Ensembl peptide - ENSDARP00000129810
NCBI entrez gene - 101883291     See in Manteia.
swissprot - E7FDE3
swissprot - X1WHU6
ZFIN ID - ZDB-GENE-131127-382
Ensembl - ENSDARG00000075905
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tgfbrap1 / transforming growth factor, beta receptor associated protein 1 / Q3UR70* / Q8WUH2* / Mus musculus transforming growth factor, beta receptor associated protein 1 (Tgfbrap1), trans...ENSDARG0000006150834
vps39 / vacuolar protein sorting 39 homolog (S. cerevisiae) / Q8R5L3* / Q96JC1* / VPS39, HOPS complex subunit*ENSDARG0000007447122


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001180  Citron homology (CNH) domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR019452  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
 IPR019453  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0046332 SMAD binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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