ENSDARG00000074471
Danio rerio | |
Features
| Gene ID: | ENSDARG00000074471 | | | | | Biological name : | vps39 | | | | | Synonyms : | vacuolar protein sorting 39 homolog (S. cerevisiae) / vps39 | | | | | Possible biological names infered from orthology : | Q8R5L3 / Q96JC1 / VPS39, HOPS complex subunit | | | | | Species: | Danio rerio | | | | | Chr. number: | 17 | | Strand: | 1 | | Band: | | | Gene start: | 50074372 | | Gene end: | 50114272 | | | | | Corresponding Affymetrix probe sets: | Dr.18700.1.S1_at (Zebrafish Array) Dr.23838.1.S1_at (Zebrafish Array) | | | | | Cross references: | Ensembl peptide - ENSDARP00000100792
Ensembl peptide - ENSDARP00000129254
swissprot - F1RCV6
swissprot - X1WG99
ZFIN ID - ZDB-GENE-080530-2
Ensembl - ENSDARG00000074471
| | | |
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| tgfbrap1 / transforming growth factor, beta receptor associated protein 1 / Q3UR70* / Q8WUH2* / Mus musculus transforming growth factor, beta receptor associated protein 1 (Tgfbrap1), trans... | ENSDARG00000061508 | 24 | | si:ch211-266g18.9 | ENSDARG00000075905 | 21 |
Protein motifs (from Interpro)
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat | | IPR001180 | Citron homology (CNH) domain | | IPR011990 | Tetratricopeptide-like helical domain superfamily | | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | | IPR019452 | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 | | IPR019453 | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 | | IPR032914 | Vam6/VPS39/TRAP1 family |
Gene Ontology (GO)
Pathways (from Reactome)
No match
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000046 | retinal neural layer | retinal neural layer apoptotic , abnormal |
Show
| | ZFA:0000076 | swim bladder | swim bladder agenesis , abnormal |
Show
| | ZFA:0000107 | eye | eye decreased size , abnormal |
Show
| | ZFA:0000123 | liver | liver increased size , abnormal
liver discolored , abnormal |
Show
| | ZFA:0000144 | retinal pigmented epithelium | retinal pigmented epithelium melanocyte colorless , abnormal
retinal pigmented epithelium swollen , abnormal
retinal pigmented epithelium microvillus decreased amount , abnormal
retinal pigmented epithelium melanosome shape , abnormal
retinal pigmented epithelium melanosome immature , abnormal
retinal pigmented epithelium melanosome decreased amount , abnormal
retinal pigmented epithelium morphology , abnormal
retinal pigmented epithelium vesicle present , abnormal
retinal pigmented epithelium melanocyte colored , abnormal |
Show
| | ZFA:0000368 | integument | integument melanocyte colorless , abnormal
integument colored , abnormal
integument melanosome shape , abnormal
integument melanosome decreased amount , abnormal
integument melanocyte colored , abnormal |
Show
| | ZFA:0001094 | whole organism | whole organism anterior-posterior axis decreased length , abnormal |
Show
| | ZFA:0001114 | head | head phagocyte present , abnormal
head decreased size , abnormal |
Show
| | ZFA:0001117 | post-vent region | post-vent region phagocyte present , abnormal |
Show
| | ZFA:0001338 | intestine | intestine discolored , abnormal
intestine vesicle increased amount , abnormal
intestine vesicle decreased size , abnormal |
Show
| | ZFA:0001466 | photoreceptor outer segment layer | photoreceptor outer segment layer decreased length , abnormal |
Show
| | ZFA:0009111 | hepatocyte | hepatocyte vesicle present , abnormal
hepatocyte increased size , abnormal
hepatocyte necrotic , abnormal
hepatocyte disorganized , abnormal |
Show
| | ZFA:0009141 | macrophage | macrophage vesicle increased size , abnormal
macrophage vesicle variant shape , abnormal |
Show
| | ZFA:0009199 | iridophore | iridophore reflectivity , abnormal |
Show
|
Interacting proteins (from Reactome)
No match
0 s.
|
