ENSGALG00000008991


Gallus gallus

Features
Gene ID: ENSGALG00000008991
  
Biological name :VPS39
  
Synonyms : vam6/Vps39-like protein / VPS39
  
Possible biological names infered from orthology : Q8R5L3 / Q96JC1 / VPS39, HOPS complex subunit
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 25575504
Gene end: 25598610
  
Corresponding Affymetrix probe sets: Gga.9875.1.S1_at (Chicken Array)   GgaAffx.12603.1.S1_at (Chicken Array)   GgaAffx.12603.1.S1_s_at (Chicken Array)   GgaAffx.5674.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048485
Ensembl peptide - ENSGALP00000014608
NCBI entrez gene - 423230     See in Manteia.
RefSeq - XM_015287070
RefSeq - NM_001031194
RefSeq Peptide - NP_001026365
swissprot - A0A1D5P704
swissprot - F1NID0
Ensembl - ENSGALG00000008991
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps39ENSDARG00000074471Danio rerio
 VPS39ENSG00000166887Homo sapiens
 Vps39ENSMUSG00000027291Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TGFBRAP1 / transforming growth factor beta receptor associated protein 1 / Q3UR70* / Q8WUH2* / Mus musculus transforming growth factor, beta receptor associated protein 1 (Tgfbrap1), transc...ENSGALG0000001679525


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001180  Citron homology (CNH) domain
 IPR017986  WD40-repeat-containing domain
 IPR019452  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
 IPR019453  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
 IPR032914  Vam6/VPS39/TRAP1 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0034058 endosomal vesicle fusion IEA
 biological_processGO:1902774 late endosome to lysosome transport IEA
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IEA
 cellular_componentGO:0030897 HOPS complex IEA
 cellular_componentGO:0031902 late endosome membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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