ENSDARG00000077052


Danio rerio
chromatintnrc18silencingbindingbromoadjacenthomologybahdomainheterochromatinassemblycomplextranscriptionregulatoryregionsequence-specificdna

Features
Gene ID: ENSDARG00000077052
  
Biological name :tnrc18
  
Synonyms : tnrc18 / trinucleotide repeat containing 18
  
Possible biological names infered from orthology : O15417 / trinucleotide repeat-containing 18 protein isoform A
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 40407352
Gene end: 40488846
  
Corresponding Affymetrix probe sets: Dr.9995.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000094262
Ensembl peptide - ENSDARP00000129614
NCBI entrez gene - 559514     See in Manteia.
RefSeq - XM_005164178
RefSeq - XM_017354810
swissprot - X1WHA2
swissprot - E7FF66
ZFIN ID - ZDB-GENE-100326-1
Ensembl - ENSDARG00000077052
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNRC18ENSGALG00000040770Gallus gallus
 O15417ENSG00000182095Homo sapiens
 Tnrc18ENSMUSG00000039477Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bahcc1b / BAH domain and coiled-coil containing 1b / BAHCC1* / Q3UHR0* / BAH domain and coiled-coil containing 1* / Mus musculus BAH domain and coiled-coil containing 1 (Bahcc1), transcript...ENSDARG0000008000924
bahcc1a / BAH domain and coiled-coil containing 1a / BAHCC1* / BAH domain and coiled-coil containing 1*ENSDARG0000010373924


Protein motifs (from Interpro)
Interpro ID Name
 IPR001025  Bromo adjacent homology (BAH) domain


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular component organizationcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound menitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular component ocellular component organizationcellular metabolic pcellular metabolic processprimary metabolic prprimary metabolic processorganic substance meorganic substance metabolic processcellular component bcellular component biogenesis
organic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingheterocyclic compound bindingchromatin bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingchromatin bindingchromatin binding
cellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellcellorganelleorganelleprotein-containing complexprotein-containing complexmembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0006342 chromatin silencing IBA
 biological_processGO:0031507 heterochromatin assembly IBA
 cellular_componentGO:0000785 chromatin IBA
 cellular_componentGO:0005677 chromatin silencing complex IBA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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