ENSDARG00000077300


Danio rerio

Features
Gene ID: ENSDARG00000077300
  
Biological name :usp42
  
Synonyms : ubiquitin specific peptidase 42 / usp42
  
Possible biological names infered from orthology : B2RQC2 / Q9H9J4
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 17570675
Gene end: 17593030
  
Corresponding Affymetrix probe sets: Dr.7289.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000117687
Ensembl peptide - ENSDARP00000130865
NCBI entrez gene - 327528     See in Manteia.
swissprot - A0A0R4IA55
swissprot - F1QY38
ZFIN ID - ZDB-GENE-030131-5739
Ensembl - ENSDARG00000077300
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP42ENSGALG00000003378Gallus gallus
 USP42ENSG00000106346Homo sapiens
 Usp42ENSMUSG00000051306Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp36 / ubiquitin specific peptidase 36 / B1AQJ2* / Q9P275*ENSDARG0000003232726
usp49 / ubiquitin specific peptidase 49 / Q6P9L4* / Q70CQ1*ENSDARG0000000022910
usp22 / A6H8I0 / ubiquitin specific peptidase 22 / USP51* / Q70EK9* / Q8CEG8* / Q9UPT9* / B1AY15* / Q5DU02* / A6NNY8* / USP27X* / ubiquitin specific protease 51* / ubiquitin specific peptid...ENSDARG0000004040710
usp3 / ubiquitin specific peptidase 3 / Q91W36* / Q9Y6I4*ENSDARG0000004564110
usp44 / ubiquitin specific peptidase 44 / Q9H0E7*ENSDARG0000008986110


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain bulbous , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0001115 trunk trunk bent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000035559 tp53 / P79734 / tumor protein p53 / Trp53* / P04637* / P02340* / transformation related protein 53*  / complex






 

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