ENSDARG00000077479


Danio rerio

Features
Gene ID: ENSDARG00000077479
  
Biological name :msh5
  
Synonyms : msh5 / mutS homolog 5
  
Possible biological names infered from orthology : MSH5-SAPCD1 / MSH5-SAPCD1 readthrough (NMD candidate) / O43196
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 39934295
Gene end: 39955785
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000097595
Ensembl peptide - ENSDARP00000129461
Ensembl peptide - ENSDARP00000157431
swissprot - E7F6L5
swissprot - X1WGV2
ZFIN ID - ZDB-GENE-131127-632
Ensembl - ENSDARG00000077479
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038188Gallus gallus
 MSH5ENSG00000204410Homo sapiens
 MSH5-SAPCD1ENSG00000255152Homo sapiens
 Msh5ENSMUSG00000007035Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000432  DNA mismatch repair protein MutS, C-terminal
 IPR007696  DNA mismatch repair protein MutS, core
 IPR007861  DNA mismatch repair protein MutS, clamp
 IPR011184  DNA mismatch repair Msh2-type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006298 mismatch repair IEA
 biological_processGO:0051026 chiasma assembly IBA
 cellular_componentGO:0000795 synaptonemal complex IBA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IBA
 molecular_functionGO:0030983 mismatched DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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