ENSDARG00000078215


Danio rerio

Features
Gene ID: ENSDARG00000078215
  
Biological name :rbsn
  
Synonyms : rabenosyn, RAB effector / rbsn
  
Possible biological names infered from orthology : Q80Y56 / Q9H1K0 / Rabenosyn-5
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 53150972
Gene end: 53169445
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000102003
Ensembl peptide - ENSDARP00000114606
swissprot - E9QEU6
swissprot - F1QYJ2
ZFIN ID - ZDB-GENE-100525-1
Ensembl - ENSDARG00000078215
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBSNENSGALG00000008500Gallus gallus
 RBSNENSG00000131381Homo sapiens
 RbsnENSMUSG00000014550Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000306  FYVE zinc finger
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR017455  Zinc finger, FYVE-related
 IPR021565  Rabenosyn, Rab binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000011 vacuole inheritance IBA
 biological_processGO:0006895 Golgi to endosome transport IBA
 biological_processGO:0006896 Golgi to vacuole transport IBA
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0034058 endosomal vesicle fusion IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010009 cytoplasmic side of endosome membrane IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0017137 Rab GTPase binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Toll Like Receptor 9 (TLR9) Cascade
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000014793 ehd1b / EH-domain containing 1b / EHD1* / Q9WVK4* / Q9H4M9* / EH domain containing 1* / EH domain-containing protein 1 *  / complex / reaction
 ENSDARG00000007869 ehd3 / EH-domain containing 3 / Q9NZN3*  / complex / reaction
 ENSDARG00000035137 ehd2a / EH-domain containing 2a / EHD2* / Q9NZN4* / Q8BH64* / EH domain containing 2* / EH domain-containing protein 2 *  / complex / reaction
 ENSDARG00000040362 ehd2b / EH-domain containing 2b / EHD2* / Q9NZN4* / Q8BH64* / EH domain containing 2* / EH domain-containing protein 2 *  / complex / reaction
 ENSDARG00000098853 ehd1a / EH-domain containing 1a / EHD1* / Q9WVK4* / Q9H4M9* / EH domain containing 1* / EH domain-containing protein 1 *  / complex / reaction






 

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