ENSDARG00000078328


Danio rerio

Features
Gene ID: ENSDARG00000078328
  
Biological name :sec22a
  
Synonyms : sec22a / SEC22 homolog A, vesicle trafficking protein
  
Possible biological names infered from orthology : Q8BH47 / Q96IW7
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 37850360
Gene end: 37862563
  
Corresponding Affymetrix probe sets: Dr.18740.1.S1_at (Zebrafish Array)   NM_199698_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000148147
Ensembl peptide - ENSDARP00000118013
Ensembl peptide - ENSDARP00000076602
NCBI entrez gene - 324832     See in Manteia.
RefSeq - NM_199698
RefSeq - XM_021478609
RefSeq Peptide - NP_955992
swissprot - F1QC92
swissprot - F1QBW3
ZFIN ID - ZDB-GENE-030131-3553
Ensembl - ENSDARG00000078328
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC22AENSGALG00000011697Gallus gallus
 Q96IW7ENSG00000121542Homo sapiens
 Q8BH47ENSMUSG00000034473Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sec22c / SEC22 homolog C, vesicle trafficking protein / Q8BXT9* / Q9BRL7* / Vesicle-trafficking protein SEC22c *ENSDARG0000006338740
sec22ba / SEC22 homolog B, vesicle trafficking protein a / O75396* / SEC22B* / O08547* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*ENSDARG0000003010821
Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...ENSDARG0000010043521


Protein motifs (from Interpro)
Interpro ID Name
 IPR010908  Longin domain
 IPR011012  Longin-like domain superfamily
 IPR027152  Vesicle-trafficking protein Sec22a


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0048280 vesicle fusion with Golgi apparatus IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr