ENSDARG00000079947


Danio rerio

Features
Gene ID: ENSDARG00000079947
  
Biological name :gfi1b
  
Synonyms : gfi1b / growth factor independent 1B transcription repressor
  
Possible biological names infered from orthology : growth factor independent 1B transcriptional repressor / O70237 / Q5VTD9 / Zinc finger protein Gfi-1b
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 17280309
Gene end: 17296789
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000117376
Ensembl peptide - ENSDARP00000145290
Ensembl peptide - ENSDARP00000103094
NCBI entrez gene - 100151531     See in Manteia.
RefSeq - NM_001271841
RefSeq Peptide - NP_001258770
swissprot - E7FBX7
swissprot - F1QP37
ZFIN ID - ZDB-GENE-091118-129
Ensembl - ENSDARG00000079947
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GFI1BENSGALG00000003478Gallus gallus
 GFI1BENSG00000165702Homo sapiens
 Gfi1bENSMUSG00000026815Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gfi1aa / growth factor independent 1A transcription repressor a / GFI1* / Q99684* / growth factor independent 1 transcriptional repressor*ENSDARG0000002074654
gfi1ab / growth factor independent 1A transcription repressor b / GFI1* / Q99684* / growth factor independent 1 transcriptional repressor*ENSDARG0000004445754
fezf1 / Q25C93 / FEZ family zinc finger 1 / Q0VDQ9* / A0PJY2* / Fez family zinc finger protein 1 *ENSDARG0000001027028
fezf2 / Q804Q5 / FEZ family zinc finger 2 / Q9ESP5* / Q8TBJ5* / Fez family zinc finger protein 2 *ENSDARG0000007067726


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR029840  Zinc finger protein Gfi-1/1b


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030099 myeloid cell differentiation IMP
 biological_processGO:0030218 erythrocyte differentiation IMP
 biological_processGO:0060216 definitive hemopoiesis IMP
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton dysplastic , abnormal
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 ZFA:0009014 hematopoietic stem cell hematopoietic stem cell decreased amount , abnormal
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 ZFA:0009323 thrombocyte thrombocyte decreased amount , abnormal
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 ZFA:0009325 erythroid lineage cell erythroid lineage cell hemoglobin complex decreased amount , abnormal
erythroid lineage cell hemoglobin complex agenesis , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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