ENSDARG00000090035


Danio rerio

Features
Gene ID: ENSDARG00000090035
  
Biological name :rtn4r
  
Synonyms : reticulon 4 receptor / rtn4r
  
Possible biological names infered from orthology : Q99PI8 / Q9BZR6
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 10765611
Gene end: 10946379
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000137082
Ensembl peptide - ENSDARP00000035812
Ensembl peptide - ENSDARP00000128105
swissprot - A0A1Y7AKU3
swissprot - F1QPB1
swissprot - X1WD08
ZFIN ID - ZDB-GENE-040310-1
Ensembl - ENSDARG00000090035
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000007732Gallus gallus
 RTN4RENSG00000040608Homo sapiens
 Rtn4rENSMUSG00000043811Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rtn4rl2b / reticulon 4 receptor-like 2b / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000003749536
rtn4rl1b / reticulon 4 receptor-like 1b / Q86UN2* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000009852836
rtn4rl1a / reticulon 4 receptor-like 1a / Q86UN2* / Q8K0S5* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000000785635
rtn4rl2a / reticulon 4 receptor-like 2 a / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000005201234
lrrc24 / leucine rich repeat containing 24 / Q50LG9* / Q8BHA1* / Leucine-rich repeat-containing protein 24 *ENSDARG0000010170420
si:ch211-237i5.4ENSDARG0000008883318
lrrc38a / leucine rich repeat containing 38a / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000007514716
lrtm1 / leucine rich repeats and transmembrane domains 1 / Q9HBL6*ENSDARG0000009874216
lrtm2a / leucine-rich repeats and transmembrane domains 2a / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004548315
lrtm2b / leucine-rich repeats and transmembrane domains 2b / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004581115
lrrc38b / leucine rich repeat containing 38b / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000008774515
LRRC52 / si:dkey-52j6.3 / Q5M8M9* / Q8N7C0* / leucine rich repeat containing 52* / Leucine-rich repeat-containing protein 52 *ENSDARG0000009069815
CABZ01112864.1 / LRRC52* / Q8N7C0* / leucine rich repeat containing 52*ENSDARG0000009993713


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007411 axon guidance IMP
 biological_processGO:0048936 peripheral nervous system neuron axonogenesis IMP
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Axonal growth inhibition (RHOA activation)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000175 posterior lateral line nerve posterior lateral line nerve decreased length , abnormal
posterior lateral line nerve defasciculated , abnormal
Show

 ZFA:0000641 cranial nerve cranial nerve morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr