ENSDARG00000090751


Danio rerio

Features
Gene ID: ENSDARG00000090751
  
Biological name :zc3h3
  
Synonyms : zc3h3 / zinc finger CCCH-type containing 3
  
Possible biological names infered from orthology : Q8CHP0 / Q8IXZ2
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 32717438
Gene end: 32834385
  
Corresponding Affymetrix probe sets: Dr.8949.1.A1_at (Zebrafish Array)   XM_684588_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000128264
Ensembl peptide - ENSDARP00000105060
NCBI entrez gene - 561182     See in Manteia.
RefSeq - XM_684588
swissprot - X1WDG5
swissprot - E7FH07
ZFIN ID - ZDB-GENE-030131-9399
Ensembl - ENSDARG00000090751
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZC3H3ENSGALG00000043265Gallus gallus
 ZC3H3ENSG00000014164Homo sapiens
 Zc3h3ENSMUSG00000075600Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cpsf4 / cleavage and polyadenylation specific factor 4 / O95639* / Q8BQZ5* / Cleavage and polyadenylation specificity factor subunit 4 *ENSDARG000000202175


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0016973 poly(A)+ mRNA export from nucleus IBA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004521 endoribonuclease activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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