ENSDARG00000090993


Danio rerio

Features
Gene ID: ENSDARG00000090993
  
Biological name :rnf4
  
Synonyms : ring finger protein 4 / rnf4
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF4 / P78317 / Q9QZS2
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 17566383
Gene end: 17576662
  
Corresponding Affymetrix probe sets: Dr.17303.1.S1_at (Zebrafish Array)   XM_678336_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000111959
Ensembl peptide - ENSDARP00000157610
Ensembl peptide - ENSDARP00000138497
Ensembl peptide - ENSDARP00000132556
NCBI entrez gene - 557319     See in Manteia.
RefSeq - XM_021481142
RefSeq - XM_678336
swissprot - E7EXS0
swissprot - A0A0R4IUS5
swissprot - A0A0R4IGJ9
ZFIN ID - ZDB-GENE-041008-246
Ensembl - ENSDARG00000090993
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF4ENSGALG00000015668Gallus gallus
 RNF4ENSG00000063978Homo sapiens
 Rnf4ENSMUSG00000029110Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IBA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0016605 PML body IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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