ENSGALG00000015668


Gallus gallus

Features
Gene ID: ENSGALG00000015668
  
Biological name :RNF4
  
Synonyms : E3 ubiquitin-protein ligase RNF4 / RNF4
  
Possible biological names infered from orthology : P78317 / Q9QZS2 / ring finger protein 4
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 83162316
Gene end: 83178370
  
Corresponding Affymetrix probe sets: Gga.1916.1.S1_s_at (Chicken Array)   Gga.7966.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025219
NCBI entrez gene - 422886     See in Manteia.
RefSeq - XM_015285896
RefSeq - NM_001012889
RefSeq - XM_015285894
RefSeq - XM_015285895
RefSeq Peptide - NP_001012907
swissprot - F1ND52
Ensembl - ENSGALG00000015668
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf4ENSDARG00000090993Danio rerio
 RNF4ENSG00000063978Homo sapiens
 Rnf4ENSMUSG00000029110Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IBA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046685 response to arsenic-containing substance IEA
 biological_processGO:0090169 regulation of spindle assembly IEA
 biological_processGO:0090234 regulation of kinetochore assembly IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016605 PML body IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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