ENSDARG00000098103


Danio rerio
rnaiitefbregulationsequence-specificdnabindingactivitybasic-leucinezipperdomaindna-templatedmulticellularorganismdevelopmentcellularresponselightstimulusnucleusregulatoryregiontranscriptionalactivatorproximalpromoterdna-bindingfactor

Features
Gene ID: ENSDARG00000098103
  
Biological name :tefb
  
Synonyms : tefb / thyrotrophic embryonic factor b
  
Possible biological names infered from orthology : Q10587 / Q9JLC6 / TEF / TEF, PAR bZIP transcription factor / Thyrotroph embryonic factor
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 5052822
Gene end: 5067585
  
Corresponding Affymetrix probe sets: Dr.10368.1.A1_at (Zebrafish Array)   Dr.18763.1.A1_at (Zebrafish Array)   NM_001020661_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000131779
NCBI entrez gene - 553686     See in Manteia.
RefSeq - NM_001020661
RefSeq Peptide - NP_001018497
swissprot - F1QEE6
ZFIN ID - ZDB-GENE-050522-224
Ensembl - ENSDARG00000098103
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TEFENSGALG00000011958Gallus gallus
 TEFENSG00000167074Homo sapiens
 TefENSMUSG00000022389Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tefa / thyrotrophic embryonic factor a / TEF* / Q9JLC6* / Q10587* / Thyrotroph embryonic factor * / TEF, PAR bZIP transcription factor*ENSDARG0000003911755
hlfb / hepatic leukemia factor b / HLF* / Q16534* / Q8BW74* / Hepatic leukemia factor * / HLF, PAR bZIP transcription factor*ENSDARG0000006101142
dbpa / D site albumin promoter binding protein a / DBP* / Q10586* / Q60925* / D site-binding protein * / D-box binding PAR bZIP transcription factor*ENSDARG0000006301442
hlfa / hepatic leukemia factor a / HLF* / Q16534* / HLF, PAR bZIP transcription factor*ENSDARG0000007475241
dbpb / D site albumin promoter binding protein b / DBP* / Q10586* / Q60925* / D site-binding protein * / D-box binding PAR bZIP transcription factor*ENSDARG0000005765239
CABZ01087224.1ENSDARG0000011126919


Protein motifs (from Interpro)
Interpro ID Name
 IPR004827  Basic-leucine zipper domain


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular response to stimulusresponse to abiotic stimulusnitrogen compoundnitrogen compound metabolic processbiosynthetic procbiosynthetic processcellular metabolicellular metabolic processprimary metabolicprimary metabolic processorganic substanceorganic substance metabolic processanatomical structanatomical structure developmentcellular responsecellular response to stimulusresponse to abiotresponse to abiotic stimulus
organic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityDNA-binding transcription factor activity
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0071482 cellular response to light stimulus IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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