ENSDARG00000099930


Danio rerio

Features
Gene ID: ENSDARG00000099930
  
Biological name :col27a1b
  
Synonyms : col27a1b / collagen, type XXVII, alpha 1b
  
Possible biological names infered from orthology : COL27A1 / Collagen alpha-1(XXVII) chain / collagen type XXVII alpha 1 chain / Q5QNQ9 / Q8IZC6
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 65180792
Gene end: 65319387
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000134161
Ensembl peptide - ENSDARP00000139343
swissprot - A0A0R4IFJ5
swissprot - A0A0R4IVX8
ZFIN ID - ZDB-GENE-100119-2
Ensembl - ENSDARG00000099930
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q8IZC6ENSG00000196739Homo sapiens
 Q5QNQ9ENSMUSG00000045672Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col11a1b / collagen, type XI, alpha 1b / Q61245* / P12107* / COL11A1* / Collagen alpha-1(XI) chain * / collagen type XI alpha 1 chain*ENSDARG0000000901430
col11a2 / collagen, type XI, alpha 2 / Q64739* / P13942* / Collagen alpha-2(XI) chain * / collagen type XI alpha 2 chain*ENSDARG0000001242230
col5a1 / procollagen, type V, alpha 1 / O88207* / P20908* / Collagen alpha-1(V) chain * / collagen type V alpha 1 chain*ENSDARG0000001259330
col11a1a / collagen, type XI, alpha 1a / Q61245* / P12107* / COL11A1* / Collagen alpha-1(XI) chain * / collagen type XI alpha 1 chain*ENSDARG0000002616530
col5a3a / collagen, type V, alpha 3a / COL5A3* / P25940* / collagen, type V, alpha 3* / collagen type V alpha 3 chain*ENSDARG0000009829429
col5a3b / collagen, type V, alpha 3b / COL5A3* / P25940* / collagen, type V, alpha 3* / collagen type V alpha 3 chain*ENSDARG0000010181629
col1a1a / collagen, type I, alpha 1a / COL1A1* / P02452* / P11087* / Collagen alpha-1(I) chain * / collagen type I alpha 1 chain*ENSDARG0000001240528
col2a1a / collagen, type II, alpha 1a / COL2A1* / P02458* / P28481* / collagen type II alpha 1 chain* / Collagen alpha-1(II) chain Collagen alpha-1(II) chain Chondrocalcin*ENSDARG0000006909327
col2a1b / collagen, type II, alpha 1b / COL2A1* / P02458* / collagen type II alpha 1 chain*ENSDARG0000001140726
col5a2b / collagen, type V, alpha 2b / COL5A2* / P05997* / Q3U962* / Collagen alpha-2(V) chain * / collagen type V alpha 2 chain*ENSDARG0000002484726
col5a2a / collagen, type V, alpha 2a / COL5A2* / P05997* / Q3U962* / Collagen alpha-2(V) chain * / collagen type V alpha 2 chain*ENSDARG0000003167826
col1a1b / collagen, type I, alpha 1b / COL1A1* / P02452* / P11087* / Collagen alpha-1(I) chain * / collagen type I alpha 1 chain*ENSDARG0000003580926
si:ch211-196i2.1ENSDARG0000000791224
col1a2 / collagen, type I, alpha 2 / Q01149* / P08123* / Collagen alpha-2(I) chain * / collagen type I alpha 2 chain*ENSDARG0000002000724
si:dkey-61l1.4ENSDARG0000009256721
si:dkey-21p1.3ENSDARG0000000229519
si:ch1073-286c18.5ENSDARG000000985671


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
MET activates PTK2 signaling
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord collapsed , abnormal
notochord undulate , abnormal
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 ZFA:0001559 vertebral column vertebral column curved lateral , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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