ENSDARG00000100455


Danio rerio

Features
Gene ID: ENSDARG00000100455
  
Biological name :pnkp
  
Synonyms : pnkp / polynucleotide kinase 3-phosphatase
  
Possible biological names infered from orthology : Q96T60
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 14163193
Gene end: 14194208
  
Corresponding Affymetrix probe sets: Dr.18508.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000141442
Ensembl peptide - ENSDARP00000156428
Ensembl peptide - ENSDARP00000149273
Ensembl peptide - ENSDARP00000130085
Ensembl peptide - ENSDARP00000139368
NCBI entrez gene - 569462     See in Manteia.
RefSeq - NM_001077578
RefSeq Peptide - NP_001071046
swissprot - A0A0R4IZK3
swissprot - A0A0R4IRS4
ZFIN ID - ZDB-GENE-061013-433
Ensembl - ENSDARG00000100455
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PNKPENSG00000039650Homo sapiens
 PnkpENSMUSG00000002963Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
aptx / aprataxin / Q7TQC5* / Q7Z2E3*ENSDARG0000002714312


Protein motifs (from Interpro)
Interpro ID Name
 IPR006549  HAD-superfamily hydrolase,subfamily IIIA
 IPR006550  Polynucleotide kinase 3-phosphatase, metazoan
 IPR006551  Polynucleotide 3"-phosphatase
 IPR008984  SMAD/FHA domain superfamily
 IPR013954  Polynucleotide kinase 3 phosphatase
 IPR023214  HAD superfamily
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000003749 polb / polymerase (DNA directed), beta / P06746* / Q8K409* / DNA polymerase beta*  / complex / reaction
 ENSDARG00000018061 neil1 / nei-like DNA glycosylase 1 / Q8K4Q6* / Q96FI4* / Endonuclease 8-like 1 *  / complex / reaction
 ENSDARG00000009494 xrcc1 / X-ray repair complementing defective repair in Chinese hamster cells 1 / P18887* / Q60596* / X-ray repair cross complementing 1*  / complex / reaction
 ENSDARG00000052553 lig3 / ligase III, DNA, ATP-dependent / P49916* / DNA ligase 3*  / complex / reaction






 

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