ENSDARG00000102389


Danio rerio

Features
Gene ID: ENSDARG00000102389
  
Biological name :ved
  
Synonyms : ved / ventrally expressed dharma/bozozok antagonist
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 44997062
Gene end: 45002196
  
Corresponding Affymetrix probe sets: Dr.19888.1.S1_at (Zebrafish Array)   NM_183074_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000140685
NCBI entrez gene - 368201     See in Manteia.
RefSeq - NM_183074
RefSeq Peptide - NP_898897
swissprot - Q8AV71
ZFIN ID - ZDB-GENE-030813-1
Ensembl - ENSDARG00000102389
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000045343Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vox / ventral homeobox / VENTX* / O95231* / VENT homeobox*ENSDARG0000009976120
vent / ventral expressed homeobox / VENTX* / O95231* / VENT homeobox*ENSDARG0000010048318
mnx2b / motor neuron and pancreas homeobox 2bENSDARG0000003035017
mnx1 / motor neuron and pancreas homeobox 1 / P50219* / Q9QZW9*ENSDARG0000003598417
mnx2a / motor neuron and pancreas homeobox 2aENSDARG0000004210617
evx2 / even-skipped homeobox 2ENSDARG0000005925517
evx1 / even-skipped homeobox 1 / P23683* / P49640* / Homeobox even-skipped homolog protein 1 *ENSDARG0000010008717
gbx1 / gastrulation brain homeobox 1 / P82976* / Q14549* / Homeobox protein GBX-1 *ENSDARG0000007141815
evx1 / even-skipped homeobox 1 / P23683* / P49640* / Homeobox even-skipped homolog protein 1 *ENSDARG0000009936515
nkx1.2lb / NK1 transcription factor related 2-like,b / Q15270* / NKX1-1* / NK1 homeobox 1* / NK1 transcription factor-related protein 1 *ENSDARG0000009942715
gbx2 / gastrulation brain homeobox 2 / P48031* / P52951* / Homeobox protein GBX-2 *ENSDARG0000000293314
nkx1.2la / NK1 transcription factor related 2-like,a / Q9UD57* / NKX1-2* / P42580* / NK1 homeobox 2* / NK1 transcription factor-related protein 2 *ENSDARG0000000635014
meox2a / mesenchyme homeobox 2a / MEOX2* / P50222* / P32443* / mesenchyme homeobox 2* / Homeobox protein MOX-2 *ENSDARG0000004091114
meox1 / F1Q4R9 / mesenchyme homeobox 1ENSDARG0000000789113
meox2b / mesenchyme homeobox 2b / MEOX2* / P50222* / P32443* / mesenchyme homeobox 2* / Homeobox protein MOX-2 *ENSDARG0000006181813
pnx / F1R2J1 / posterior neuron-specific homeoboxENSDARG0000002589912
eve1 / even-skipped-like1ENSDARG0000005601212


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0009953 dorsal/ventral pattern formation IGI
 biological_processGO:0021520 spinal cord motor neuron cell fate specification IBA
 biological_processGO:0031018 endocrine pancreas development IBA
 biological_processGO:0036342 post-anal tail morphogenesis IGI
 biological_processGO:0042661 regulation of mesodermal cell fate specification IGI
 biological_processGO:0042663 regulation of endodermal cell fate specification IMP
 biological_processGO:0048812 neuron projection morphogenesis IBA
 biological_processGO:0060061 Spemann organizer formation IDA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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