ENSDARG00000102892


Danio rerio

Features
Gene ID: ENSDARG00000102892
  
Biological name :h1m
  
Synonyms : h1m / linker histone H1M
  
Possible biological names infered from orthology : H1FOO / H1 histone family member O oocyte specific / Mus musculus H1 histone family, member O, oocyte-specific (H1foo), transcript variant 2, mRNA. / Q8IZA3 / Q8VIK3
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 68326858
Gene end: 68333081
  
Corresponding Affymetrix probe sets: Dr.24203.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130504
swissprot - A0A0R4IAV0
ZFIN ID - ZDB-GENE-030131-5614
Ensembl - ENSDARG00000102892
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H1FOOENSG00000178804Homo sapiens
 H1fooENSMUSG00000042279Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hp1bp3 / heterochromatin protein 1, binding protein 3 / Q3TEA8* / Q5SSJ5* / Mus musculus heterochromatin protein 1, binding protein 3 (Hp1bp3), transcript variant 9, mRNA.*ENSDARG0000004466921


Protein motifs (from Interpro)
Interpro ID Name
 IPR005818  Linker histone H1/H5, domain H15
 IPR005819  Histone H5
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IEA
 cellular_componentGO:0000785 chromatin IDA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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