ENSMUSG00000042279


Mus musculus

Features
Gene ID: ENSMUSG00000042279
  
Biological name :H1foo
  
Synonyms : H1foo / Mus musculus H1 histone family, member O, oocyte-specific (H1foo), transcript variant 2, mRNA. / Q8VIK3
  
Possible biological names infered from orthology : H1 histone family member O oocyte specific / Q8IZA3
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: E3
Gene start: 115944938
Gene end: 115950236
  
Corresponding Affymetrix probe sets: 10540993 (MoGene1.0st)   1416518_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000123797
Ensembl peptide - ENSMUSP00000144958
Ensembl peptide - ENSMUSP00000125701
Ensembl peptide - ENSMUSP00000124090
Ensembl peptide - ENSMUSP00000036951
NCBI entrez gene - 171506     See in Manteia.
MGI - MGI:2176207
RefSeq - XM_006505678
RefSeq - NM_001346702
RefSeq - NM_138311
RefSeq Peptide - NP_001333631
RefSeq Peptide - NP_612184
swissprot - Q8VIK3
swissprot - E0CZ52
swissprot - A0A0N4SV54
swissprot - E0CYL2
Ensembl - ENSMUSG00000042279
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 h1mENSDARG00000102892Danio rerio
 H1FOOENSG00000178804Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Hp1bp3 / Q3TEA8 / Mus musculus heterochromatin protein 1, binding protein 3 (Hp1bp3), transcript variant 9, mRNA. / Q5SSJ5* / heterochromatin protein 1 binding protein 3*ENSMUSG0000002875922


Protein motifs (from Interpro)
Interpro ID Name
 IPR005818  Linker histone H1/H5, domain H15
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0016584 nucleosome positioning IDA
 biological_processGO:0044030 regulation of DNA methylation IDA
 biological_processGO:0051321 meiotic cell cycle IEA
 biological_processGO:2000737 negative regulation of stem cell differentiation IMP
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0001674 female germ cell nucleus IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0031492 nucleosomal DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Ptgs2tm1Unc/Ptgs2tm1Unc
Genetic Background: D1.129P2(B6J)-Ptgs2tm1Unc

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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