ENSDARG00000103350


Danio rerio

Features
Gene ID: ENSDARG00000103350
  
Biological name :trim24
  
Synonyms : trim24 / tripartite motif containing 24
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 74141400
Gene end: 74205303
  
Corresponding Affymetrix probe sets: Dr.16482.1.A1_at (Zebrafish Array)   NM_001002870_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130383
NCBI entrez gene - 442869     See in Manteia.
RefSeq - NM_001002870
RefSeq Peptide - NP_001002870
swissprot - A0A0R4IBT4
ZFIN ID - ZDB-GENE-030131-5913
Ensembl - ENSDARG00000103350
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim33 / tripartite motif containing 33 / Q9UPN9*ENSDARG0000001618135
trim66 / tripartite motif containing 66 / O15016* / Q924W6*ENSDARG0000005433221
trim33l / tripartite motif containing 33, likeENSDARG0000008612618
trim71 / E7FAM5 / tripartite motif containing 71, E3 ubiquitin protein ligase / Q2Q1W2* / Q1PSW8* / tripartite motif containing 71*ENSDARG0000007559312
trim3b / tripartite motif containing 3b / TRIM3* / Q9R1R2* / O75382* / tripartite motif containing 3*ENSDARG0000000539711
trim2a / tripartite motif containing 2a / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG0000003181711
trim3a / tripartite motif containing 3a / TRIM3* / Q9R1R2* / O75382* / tripartite motif containing 3*ENSDARG0000006371111
trim45 / tripartite motif containing 45 / Q6PFY8* / Q9H8W5* / Tripartite motif-containing protein 45 *ENSDARG000000767819
trim2b / tripartite motif containing 2b / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG000000761747


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001487  Bromodomain
 IPR001841  Zinc finger, RING-type
 IPR001965  Zinc finger, PHD-type
 IPR003649  B-box, C-terminal
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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