ENSDARG00000103690


Danio rerio
endosomevipas39transcriptiondna-templatedproteintransportbilevpsc-terminalregulationintracellularspermatogenesiscelldifferentiationhepaticobiliarydevelopmentcytoplasmearlylatecytoplasmicvesiclerecyclingductuleintrahepaticduct

Features
Gene ID: ENSDARG00000103690
  
Biological name :vipas39
  
Synonyms : Q5TYV4 / vipas39 / VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
  
Possible biological names infered from orthology : Q8BGQ1 / Q9H9C1
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 18352770
Gene end: 18382892
  
Corresponding Affymetrix probe sets: Dr.4192.1.A1_at (Zebrafish Array)   NM_001001836_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000132081
Ensembl peptide - ENSDARP00000157217
Ensembl peptide - ENSDARP00000138365
Ensembl peptide - ENSDARP00000138319
NCBI entrez gene - 415096     See in Manteia.
RefSeq - NM_001001836
RefSeq Peptide - NP_001001836
swissprot - A0A0R4IPY1
swissprot - A0A0R4IF88
swissprot - A0A0R4IQ05
swissprot - Q5TYV4
ZFIN ID - ZDB-GENE-040520-1
Ensembl - ENSDARG00000103690
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VIPAS39ENSGALG00000010459Gallus gallus
 Q9H9C1ENSG00000151445Homo sapiens
 Q8BGQ1ENSMUSG00000021038Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006925  Vps16, C-terminal


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationmulticellular organism reproductioncellular developmental processanatomical structure developmentnitrogen comnitrogen compound metabolic processbiosyntheticbiosynthetic processcellular metcellular metabolic processprimary metaprimary metabolic processorganic subsorganic substance metabolic processmacromoleculmacromolecule localizationestablishmenestablishment of localizationcellular loccellular localizationmulticellulamulticellular organism reproductioncellular devcellular developmental processanatomical sanatomical structure development
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0061008 hepaticobiliary system development IMP
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0055037 recycling endosome IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005164 bile ductule bile ductule decreased amount , abnormal
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 ZFA:0005169 intrahepatic bile duct intrahepatic bile duct decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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