ENSDARG00000105214


Danio rerio

Features
Gene ID: ENSDARG00000105214
  
Biological name :agtpbp1
  
Synonyms : agtpbp1 / ATP/GTP binding protein 1
  
Possible biological names infered from orthology : Cytosolic carboxypeptidase 1 / Q641K1 / Q9UPW5
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 49885638
Gene end: 49935358
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131912
Ensembl peptide - ENSDARP00000137743
NCBI entrez gene - 554164     See in Manteia.
RefSeq - NM_001024445
RefSeq Peptide - NP_001019616
swissprot - A0A0R4IRP2
swissprot - A0A0R4IG37
ZFIN ID - ZDB-GENE-081104-267
Ensembl - ENSDARG00000105214
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AGTPBP1ENSGALG00000012595Gallus gallus
 Q9UPW5ENSG00000135049Homo sapiens
 Q641K1ENSMUSG00000021557Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AGBL1 / si:ch73-141f14.1 / Q09M05* / Q96MI9* / Cytosolic carboxypeptidase 4 * / ATP/GTP binding protein like 1*ENSDARG0000010438440
agbl2 / ATP/GTP binding protein-like 2 / Q5U5Z8* / Q8CDK2* / Mus musculus ATP/GTP binding protein-like 2 (Agbl2), transcript variant 2, mRNA.*ENSDARG0000007998319
agbl5 / ATP/GTP binding protein-like 5 / Q09M02* / Q8NDL9* / Cytosolic carboxypeptidase-like protein 5 *ENSDARG0000004590013
agbl4 / ATP/GTP binding protein-like 4 / Q5VU57*ENSDARG000000680506
agbl4 / ATP/GTP binding protein-like 4 / Q5VU57*ENSDARG000001108384


Protein motifs (from Interpro)
Interpro ID Name
 IPR000834  Peptidase M14, carboxypeptidase A
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR033852  Cytosolic aminopeptidase 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0021702 cerebellar Purkinje cell differentiation IEA
 molecular_functionGO:0004181 metallocarboxypeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000048 olfactory placode olfactory placode morphology , abnormal
olfactory placode decreased size , abnormal
olfactory placode cilium aggregated , abnormal
Show

 ZFA:0000075 spinal cord spinal cord apoptotic process increased process quality , abnormal
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 ZFA:0000107 eye eye apoptotic process increased process quality , abnormal
eye decreased size , abnormal
Show

 ZFA:0001078 thymus thymus decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism curved ventral , abnormal
Show

 ZFA:0001261 ventricular system ventricular system edematous , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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